D5.2 Phylogenetic Diversity

Lissa Breugelmans; Louise A Hendrickx; Quentin Groom; Joe Miller; Ward Langeraert; Shawn Dove; Hanno Seebens; Michele Di Musciano; Duccio Rocchini; Maarten Trekels

D5.2 Phylogenetic Diversity

Lissa Breugelmans
, Louise A Hendrickx
, Quentin Groom
, Joe Miller
, Ward Langeraert
, Shawn Dove
, Hanno Seebens
, Michele Di Musciano
, Duccio Rocchini
, Maarten Trekels

Biometrie, methodologie en kwaliteitszorg

Onderzoeksoutput: Boek/rapport › Rapport niet door INBO uitgegeven

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We developed and released the R-package pdindicatoR to produce phylogenetic diversity maps and calculate a phylogenetic diversity indicator based on species occurrence cubes and phylogenetic trees. The produced maps show the spatial distribution of phylogenetic diversity as well as the location of protected areas, and they can for example be used to inform policymakers and as a planning tool for conservation managers. The software includes functions to match tree tip labels with the Open Tree Taxonomy (OTT) and with the species in the occurrence cube based on the GBIF taxonKey, calculate phylogenetic diversity metrics, generate PD maps, and calculate a PD indicator. Documentation and example workflows are provided. The tool will be tested on the case studies of WP6 and further refined based on user feedback.

Oorspronkelijke taal	Engels

Uitgeverij	Biodiversity building blocks for policy
Aantal pagina’s	33
Publicatiestatus	Gepubliceerd - 30-nov.-2024

Thematische Lijst 2020

Data & Infrastructuur

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D5.2_2024_PhylogeneticDiversity!!Final published version, 1,06 MBLicentie: CC BY

B-Cubed - Biodiversity Building Blocks for policy
Desmet, P. (Projectleider), Adriaens, T. (Medewerker), Adriaenssens, V. (Medewerker), Cartuyvels, E. (Medewerker), Delva, S. (Medewerker), Govaert, S. (Medewerker), Hillaert, J. (Medewerker), Huybrechts, P. (Medewerker), Langeraert, W. (Medewerker), Oldoni, D. (Medewerker), Onkelinx, T. (Medewerker), Reyserhove, L. (Medewerker), Strubbe, D. (Medewerker), Van Calster, H. (Medewerker), Van Daele, T. (Medewerker), Van den Broeck, F. (Medewerker) & Vanderhaeghe, F. (Medewerker)
1/03/23 → 31/08/26
Project: EVINBO - Europees

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title = "D5.2 Phylogenetic Diversity",

abstract = "We developed and released the R-package pdindicatoR to produce phylogenetic diversity maps and calculate a phylogenetic diversity indicator based on species occurrence cubes and phylogenetic trees. The produced maps show the spatial distribution of phylogenetic diversity as well as the location of protected areas, and they can for example be used to inform policymakers and as a planning tool for conservation managers. The software includes functions to match tree tip labels with the Open Tree Taxonomy (OTT) and with the species in the occurrence cube based on the GBIF taxonKey, calculate phylogenetic diversity metrics, generate PD maps, and calculate a PD indicator. Documentation and example workflows are provided. The tool will be tested on the case studies of WP6 and further refined based on user feedback.",

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AU - Breugelmans, Lissa

AU - Hendrickx, Louise A

AU - Groom, Quentin

AU - Miller, Joe

AU - Langeraert, Ward

AU - Dove, Shawn

AU - Seebens, Hanno

AU - Di Musciano, Michele

AU - Rocchini, Duccio

AU - Trekels, Maarten

PY - 2024/11/30

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N2 - We developed and released the R-package pdindicatoR to produce phylogenetic diversity maps and calculate a phylogenetic diversity indicator based on species occurrence cubes and phylogenetic trees. The produced maps show the spatial distribution of phylogenetic diversity as well as the location of protected areas, and they can for example be used to inform policymakers and as a planning tool for conservation managers. The software includes functions to match tree tip labels with the Open Tree Taxonomy (OTT) and with the species in the occurrence cube based on the GBIF taxonKey, calculate phylogenetic diversity metrics, generate PD maps, and calculate a PD indicator. Documentation and example workflows are provided. The tool will be tested on the case studies of WP6 and further refined based on user feedback.

AB - We developed and released the R-package pdindicatoR to produce phylogenetic diversity maps and calculate a phylogenetic diversity indicator based on species occurrence cubes and phylogenetic trees. The produced maps show the spatial distribution of phylogenetic diversity as well as the location of protected areas, and they can for example be used to inform policymakers and as a planning tool for conservation managers. The software includes functions to match tree tip labels with the Open Tree Taxonomy (OTT) and with the species in the occurrence cube based on the GBIF taxonKey, calculate phylogenetic diversity metrics, generate PD maps, and calculate a PD indicator. Documentation and example workflows are provided. The tool will be tested on the case studies of WP6 and further refined based on user feedback.

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D5.2 Phylogenetic Diversity

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Thematische Lijst 2020

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Projecten

B-Cubed - Biodiversity Building Blocks for policy

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